首页|单细胞RNA测序鉴定纤维化相关基因在糖尿病相关心力衰竭中的作用

单细胞RNA测序鉴定纤维化相关基因在糖尿病相关心力衰竭中的作用

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研究旨在探寻糖尿病和心力衰竭之间可能存在的关联,并评估纤维化相关基因在其中发挥的作用。从GEO数据库中下载心力衰竭的单细胞测序和转录组测序数据;从CTD数据库中下载与糖尿病相关的基因;通过GO和KEGG通路富集分析寻找与糖尿病相关心力衰竭密切联系的通路;收集2017年3月-2019年3月在江苏大学附属人民医院接受治疗的心衰患者,通过实时聚合酶链反应测定关键基因的表达水平。在对数据进行标准化处理后,通过对GEO数据库的mRNA表达数据进行差异表达分析,从中获取与糖尿病相关心衰的差异表达基因。结果显示,共鉴定了206个差异表达的基因,包括94个上调的基因和112个下调的基因。同时,通过对糖尿病心力衰竭的心脏组织和非糖尿病心力衰竭患者的心脏组织进行差异表达分析,并从中获取差异表达基因。结果发现,共鉴定了265个差异表达基因,包括136个上调基因和129个下调基因。PPI网络表明,差异表达基因所编码的蛋白质彼此之间表现出强烈的内在联系。单细胞测序分析结果表明S100A8主要富集在心脏祖细胞中。最后,从之前所有的糖尿病心衰患者和非糖尿病心衰患者中随机选取5名患者进行PCR检测。结果提示糖尿病心衰患者中的S100A8的RNA相对表达水平相对于非糖尿病心衰患者显著提高。在这项研究中,作者发现S100A8通过损害心脏祖细胞与糖尿病心衰相关联,S100A8可以作为潜在的2型糖尿病引起的心力衰竭的生物标志物。
The Single-cell RNA Sequencing Identified the Role of Fibrosis-related Genes in Diabetes-associated Heart Failure
This study aimed to explore the potential link between diabetes and heart failure,focusing on the role of fibrosis-related genes.Utilizing single-cell and transcriptome sequencing data for heart failure from the GEO database and diabetes-related genes from the CTD database,the authors'conducted GO and KEGG pathway enrichment analyses to identify pathways closely associated with diabetes-related heart failure.Patient data collected from March 2017 to March 2019 at the Jiangsu University Affiliated People's Hospital were analyzed,with key gene expression levels measured through real-time PCR.After standardizing the data,differential expression analysis of the GEO database's mRNA expression data identified 206 differentially expressed genes associated with diabe-tes-related heart failure,including 94 upregulated and 112 downregulated genes.Further differential expression analysis between car-diac tissues of diabetic heart failure patients and non-diabetic heart failure patients identified 265 differentially expressed genes,com-prising 136 upregulated and 129 downregulated genes.The PPI network highlighted strong intrinsic connections among the proteins encoded by these differentially expressed genes.Single-cell sequencing analysis indicated that S100A8 was predominantly enriched in cardiac progenitor cells.Subsequent PCR testing of randomly selected patients from both diabetic and non-diabetic heart failure groups revealed significantly higher relative RNA expression levels of S100A8 in diabetic heart failure patients.The result showed that S100A8 is associated with diabetes-induced heart failure through its impact on cardiac progenitor cells,suggesting its potential as a biomarker for Type 2 diabetes-induced heart failure.

DiabetesHeart failureS100A8Cardiac progenitor cellsGEO databaseDifferential gene expressionFibrosis-related genesBiomarkers

李小妹、黄士蒙、高渊博、赵思玉、卢兵、陶艾彬

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江苏大学附属人民医院心内科,江苏镇江 212000

镇江市高等专科学校护理学院,江苏镇江 212000

糖尿病 心力衰竭 S100A8 心脏祖细胞 GEO数据库 差异基因表达 纤维化相关基因 生物标志物

国家自然科学基金

81971817

2024

药物生物技术
中国药科大学,中国医药科技出版社,中国药学会

药物生物技术

CSTPCD
影响因子:0.463
ISSN:1005-8915
年,卷(期):2024.31(1)
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