中国人兽共患病学报2024,Vol.40Issue(8) :732-738.DOI:10.3969/j.issn.1002-2694.2024.00.115

上海市首次自腹泻患者中检出格隆柏沙门菌的表型和分子特征研究

Phenotypic and molecular characteristics of a Salmonella Grumpensis isolate from a patient with diarrhea in Shanghai,China

王闻卿 黄卫春 苏靖华 尤舒琪 郑英杰 杨博雯 黄红 郝莉鹏 许学斌
中国人兽共患病学报2024,Vol.40Issue(8) :732-738.DOI:10.3969/j.issn.1002-2694.2024.00.115

上海市首次自腹泻患者中检出格隆柏沙门菌的表型和分子特征研究

Phenotypic and molecular characteristics of a Salmonella Grumpensis isolate from a patient with diarrhea in Shanghai,China

王闻卿 1黄卫春 2苏靖华 3尤舒琪 3郑英杰 4杨博雯 3黄红 3郝莉鹏 1许学斌5
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作者信息

  • 1. 上海市浦东新区疾病预防控制中心微生物检验科,上海 200136;复旦大学浦东预防医学研究院,上海 200136
  • 2. 上海交通大学医学院附属上海儿童医学中心检验科,上海 200127
  • 3. 上海市浦东新区疾病预防控制中心微生物检验科,上海 200136
  • 4. 复旦大学公共卫生学院,上海 200032
  • 5. 上海市疾病预防控制中心病原生物检定所,上海 200336
  • 折叠

摘要

目的 研究上海市首次自腹泻患者中检出格隆柏沙门菌的表型和分子特征,为沙门菌病防控提供依据.方法 对格隆柏分离株(2023JD76)进行生化鉴定、血清凝集试验、抗菌药物敏感性试验以及全基因组测序(whole genome sequencing,WGS).收集全球格隆柏沙门菌全基因组序列,进行血清分型、多位点序列分型(multilocus sequence typing,MLST)、耐药基因和毒力基因预测,分析2023JD76与全球株的系统进化关系.结果 2023JD76血清分型符合抗原式(Sal-monella Grumpensis,13,23:d:1,7),对20种抗菌药物均敏感,MLST型预测为2060(ST2060),携带氨基糖甙类药物耐药基因aac(6')-Iaa和5类毒力基因,包括黏附基因csg、rat,分泌和转运基因sip、inv,伤寒毒素基因cdt、plt,侵袭性基因营养代谢因子mgt和抗菌肽抗性因子mig.36株全球格隆柏菌株共携带10种耐药基因,不同毒力基因携带率为58.33%~100%.进化树将全球格隆柏沙门菌基因组分为2个支系,支系Ⅰ以ST751(88.89%,16/18)为主,支系Ⅱ以ST2060(89.47%,17/19)为主.本次分离菌株2023JD76处于支系Ⅱ内,其序列型与全球人源粪便株和人源脑脊液株全基因组序列密切相关.结论 本研究首次分离国内腹泻患者中的格隆柏沙门菌,不同地理来源菌株间耐药表型差异大,应加强监测以防范全球潜在的传播风险.

Abstract

This study was aimed at studying the phenotypic and molecular characteristics of a Salmonella Grumpensis isolate from a patient with diarrhea in Shanghai,to provide evi-dence for the prevention of salmonellosis.Biochemical identifi-cation,serum agglutination testing,antimicrobial susceptibility testing,and whole genome sequencing(WGS)were performed on isolate 2023JD76.Global Salmonella Grumpensis genome sequences were searched and downloaded for serotyping predic-tion,multilocus sequence typing(MLST),prediction of anti-microbia resistance genes and virulence genes,and phylogenetic analysis of 2023JD76.The 2023JD76 strain was identified as Salmonella Grumpensis(13,23:d:1,7)with ST2060,and was susceptible to 20 antimicrobial agents.Strain 2023JD76 carried the aminoglycoside resistance gene aac(6')-Iaa and five types of virulence genes:the adhesion genes csg and rat;the secretion and transport genes sip and inv;the typhoid toxin genes cdt and plt;the invasive gene nutrient metabolism factor mgt;and the antimicrobial peptide resistance factor mig.Global S.Grumpensis strains harbored ten types of antimicrobial resistance genes whose prevalence ranged from 58.33%to 100%.The global genome sequences of S.Grumpensis were divided into two lineages.Lineage I was dominated by ST751(88.89%,16/18),and lineage Ⅱ was dominated by ST2060(89.47%,17/19).The genome sequence of strain 2023JD76 belonged to lineage Ⅱ,and was closely related to the genome sequences from human fecal and human cerebrospinal fluid.This study provides the first report of a S.Grumpensis isolate from the stool of a patient with diarrhea in China.Considerable variability in antimicrobial resistance genes was observed among genome sequences from different sources,and the strains harbored a substantial number of virulence genes.Enhanced surveillance should be emphasized to prevent a potential risk of global dissemination.

关键词

格隆柏沙门菌/全基因组测序/多位点序列分型/耐药基因/毒力基因

Key words

Salmonella Grumpensis/whole genome sequencing/multilocus sequence typing/antimicrobial resistance gene/virulence gene

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基金项目

上海市浦东新 区卫生健康公共卫生高原学科项目(PWYggy2021-01)

出版年

2024
中国人兽共患病学报
中国微生物学会

中国人兽共患病学报

CSTPCDCSCD北大核心
影响因子:0.814
ISSN:1002-2694
参考文献量1
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