中国人兽共患病学报2024,Vol.40Issue(8) :739-744.DOI:10.3969/j.issn.1002-2694.2024.00.120

2014-2018年江苏省人源喹诺酮耐药1,4,[5],12:i:-沙门氏菌的基因组学初步分析

Genomic analysis of human quinolone resistant 1,4,[5],12:i:-Salmonella in Jiangsu Province from 2014 to 2018

郑东宇 马恺 周翌婧 吴高林 霍翔 乔昕
中国人兽共患病学报2024,Vol.40Issue(8) :739-744.DOI:10.3969/j.issn.1002-2694.2024.00.120

2014-2018年江苏省人源喹诺酮耐药1,4,[5],12:i:-沙门氏菌的基因组学初步分析

Genomic analysis of human quinolone resistant 1,4,[5],12:i:-Salmonella in Jiangsu Province from 2014 to 2018

郑东宇 1马恺 2周翌婧 3吴高林 3霍翔 1乔昕2
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作者信息

  • 1. 江苏省疾病预防控制中心,南京 210009;国家卫生健康委员会肠道病原微生物重点实验室,南京 210009;江苏省新发突发重大传染病病原微生物重点实验室,南京 210009
  • 2. 江苏省疾病预防控制中心,南京 210009;江苏省新发突发重大传染病病原微生物重点实验室,南京 210009
  • 3. 江苏省疾病预防控制中心,南京 210009
  • 折叠

摘要

目的 分析江苏省喹诺酮耐药1,4,[5],12:i:-沙门氏菌分子流行病学特征.方法 用cgMLST分析江苏省及欧美来源菌株的分子流行病学特征,并初步分析喹诺酮耐药1,4,[5],12:i:-沙门氏菌可能的传播特征.结果 13株喹诺酮耐药1,4,[5],12:i:-沙门氏菌共注释11大类抗性基因(Antibiotic resistance genes,ARGs).其中氨基糖苷类ARGs检出率最高(100%);12株喹诺酮耐药菌株(92.3%)均携带IncHI2/IncHI2A质粒类型;不同国家/地区来源菌株质粒介导喹诺酮耐药(PMQR)基因携带分析显示美国及欧洲来源菌株携带6类PMQR基因,qnrB19检出率最高.江苏省来源菌株携带3类PMQR基因类型,aac(6')-Ib-cr检出率最高(11.84%);不同国家/地区来源菌株cgMLST位点差异分析显示形成3个主要流行谱系.结论 江苏省人源喹诺酮耐药1,4,[5],12:i:-沙门氏菌分离株与欧美菌株可能具有共同进化来源,PMQR基因携带水平存在国家/地区差异.

Abstract

The molecular epidemiological characteristics of 1,4,[5],12:i:-Salmonella in Jiangsu Province were analyzed through whole genome sequencing(WGS).The distribution characteristics of related genes were obtained on the basis of anno-tated drug-resistant genes and plasmid types in the whole genome.Analysis of the molecular epidemiological characteristics of strains with cgMLST revealed possible modes of transmission of quinolone resistance in 1,4,[5],12:i:-Salmonella.Eleven cat-egories of antibiotic resistance genes(ARGs)were annotated among the fluoroquinolone-resistant strains.The detection rate of aminoglycoside ARGs was highest(100%).Twelve quinolone-resistant strains(92.3%)carried the IncHI2/IncHI2A plasmid type.PMQR gene analysis of various strains indicated that the strains from the United States and Europe carried six types of PMQR genes,and the detection rate of qnrB19 was highest.The Jiangsu strains carried three PMQR gene types,and the de-tection rate of aac(6')-Ib-cr was highest(11.84%).Analysis of cgMLST loci from different countries/regions revealed three main epidemic clusters.Some isolates from Jiangsu province might have the same evolutionary origin as some isolates from Eu-rope and the United States,and national/regional differences were observed in the PMQR gene carriage level.

关键词

1,4,[5],12:i:-沙门氏菌/喹诺酮耐药/分子流行病学

Key words

1,4,[5],12:i:-Salmonella/quinolone resistance/molecular epidemiology

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基金项目

江苏省卫健委科研项目(M2021078)

出版年

2024
中国人兽共患病学报
中国微生物学会

中国人兽共患病学报

CSTPCDCSCD北大核心
影响因子:0.814
ISSN:1002-2694
参考文献量5
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