中国现代普通外科进展2024,Vol.27Issue(2) :98-104.DOI:10.3969/j.issn.1009-9905.2024.02.003

细胞焦亡相关基因与肝细胞癌进展及预后关系的生物信息学分析

Pyroptosis-related genes defines the progression and im-mune tolerance microenvironment of hepatocellular carcino-ma

郝晓东 任一丹 丰茂晓 王允山
中国现代普通外科进展2024,Vol.27Issue(2) :98-104.DOI:10.3969/j.issn.1009-9905.2024.02.003

细胞焦亡相关基因与肝细胞癌进展及预后关系的生物信息学分析

Pyroptosis-related genes defines the progression and im-mune tolerance microenvironment of hepatocellular carcino-ma

郝晓东 1任一丹 1丰茂晓 1王允山1
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作者信息

  • 1. 山东大学第二医院 检验科(山东 济南 250033)
  • 折叠

摘要

目的:探究细胞焦亡相关基因(PRGs)在肝细胞癌(HCC)中的表达,及其与HCC进展和预后的关系.方法:利用TCGA数据库,分析原发性HCC中细胞PRGs的遗传改变和表达模式的差异,并聚类分析鉴定HCC焦亡亚型;比较HCC焦亡亚型之间患者预后及免疫微环境差异;焦亡评分量化每个样本中PRGs的综合表达,分析焦亡评分与各免疫评分的相关性.结果:原发性HCC存在两种不同的PRGs亚型,PRGs的不同表达模式与原发性HCC的预后和肿瘤微环境密切相关.PRGs高表达的亚型预后较差,功能富集分析发现部分促瘤通路和PD-1检查点通路、与免疫抑制相关的细胞和免疫检查点在该亚型中富集.焦亡评分与肿瘤浸润巨噬细胞、髓源性抑制细胞和Treg细胞浸润呈正相关.结论:PRGs可能在HCC中发挥促瘤及免疫抑制作用,有助于评估HCC患者病情发展和预后.

Abstract

Objective:To explore the expression pattern of pyroptosis-related genes(PRGs)in hepatocellular carcinoma(HCC),and analyze the relationship between its expression and tumor prog-nosis and immune microenvironment.Methods:TCGA database was used to analyze the genetic changes and expression patterns of PRGs in primary HCC cells,and cluster analysis was used to i-dentify the pyrogenic subtypes of HCC.To compare the difference of prognosis and immune mi-croenvironment among HCC pyrodeath subtypes.Scorch death score quantified the comprehensive expression of PRGs in each sample,and analyzed the correlation between scorch death score and each immune score.Results:Two pyroptosis-associated subtypes of primary HCC were identi-fied,and the expression pattern of PRGs is closely related to the prognosis of cancer patients and the tumor microenvironment.The subtype with high expression of PRGs had a poor prognosis,and functional enrichment analysis found that some tumor-promoting pathways and PD-1 checkpoint pathways were significantly enriched in this subtype.And various cells and immune checkpoints re-lated to immunosuppression were also enriched in this subtype.By constructing PYROPTO-SIS_score to quantify the comprehensive expression of pyroptosis-related genes in each sample,it was found that PYROPTOSIS_score was significantly positively correlated with tumor-infiltrating macrophages,myeloid-derived suppressor cells,and Treg cells.Conclusion:These results sug-gest that pyroptosis may play a tumor-promoting as well as immunosuppressive role in HCC,pro-viding new insights into the assessment of tumor patient prognosis and the immune microenviron-ment.

关键词

肝细胞癌/焦亡相关基因/预后/生物信息学

Key words

Hepatocellular carcinoma/Pyroptosis-related genes/Prognosis/Bioinformatics

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基金项目

国家自然科学基金(82172350)

出版年

2024
中国现代普通外科进展
山东大学

中国现代普通外科进展

CSTPCD
影响因子:0.993
ISSN:1009-9905
参考文献量17
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