首页|虾十足目虹彩病毒1、肝肠胞虫及传染性早熟病毒多重TaqMan荧光定量PCR检测方法的建立与应用

虾十足目虹彩病毒1、肝肠胞虫及传染性早熟病毒多重TaqMan荧光定量PCR检测方法的建立与应用

Establishment of a triplex TaqMan real-time PCR for detection of DIV1,EHP and IPV In Shrimp

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为建立检测十足目虹彩病毒1(DIV1)、肝肠胞虫(EHP)、传染性早熟病毒(IPV)的多重TaqMan荧光定量PCR检测方法,本研究根据DIV1 MCP基因、EHP SSU基因与IPV polyprotein A基因设计特异性引物和TaqMan探针,经各反应条件的优化建立了同时检测DIV1、EHP及IPV的多重TaqMan荧光定量PCR方法.利用该方法检测DIV1、EHP、IPV、白斑综合征病毒、致急性肝胰腺坏死弧菌、传染性皮下及造血器官坏死病毒、虾偷死病毒、传染性肌肉坏死病毒、桃拉病毒、黄头病毒1型等主要虾类病毒,结果显示,该方法仅能扩增出DIV1、EHP和IPV,与其他主要虾类病原均无交叉反应,特异性较强.对10倍倍比稀释后等浓度等体积混合的DIV1、EHP和IPV质粒标准品混合物的检测结果显示,该方法对3种病原的质粒标准品的检测限均为1.67×101拷贝/μL,各病毒单一荧光定量PCR方法的检测限均为1.67×100拷贝/μL,多重TaqMan荧光定量PCR方法的灵敏度虽略低于单一荧光定量PCR方法,但是可以同时检测3种病原,检测效率高.选取3个浓度的pDIV1、pEHP、pIPV(5×105拷贝/μL、5× 104拷贝/µL、5×103拷贝/µL)等浓度等体积混合的质粒标准品为模板,进行组内和组间重复性试验,结果显示组内与组间重复性试验的变异系数均小于1%,该方法重复性较好.利用该方法与DIV1、EHP、IPV单一荧光定量PCR方法同时检测105份虾苗和亲虾样品,结果显示,本研究建立的多重TaqMan荧光定量PCR方法对DIV1的检出率为21.9%(23/105),对EHP的检出率为14.3%(15/105),对IPV的检出率为45.7%(48/105),3种病原混合感染率为1.9%(2/105),与DIV1、EHP、IPV各单一荧光定量PCR方法的检测结果均一致,阳性样品的符合率达100%.本研究建立的DIV1、EHP、IPV多重TaqMan荧光定量PCR方法为临床同时检测该3种病原提供了特异、敏感、高效的技术手段.
In this study,a triplex real-time PCR method was developed for the simultaneous detection of decapod iridescent virus 1(DIV1),enterocytozoon hepatopenaei(EHP)and infectious precocious virus(IPV)in shrimp,based on specific primers and TaqMan probes respectively targeting DIV1 MCP gene,EHP SSU gene and IPV polyprotein A gene.The method was able to specifically detect DIV1,EHP and IPV simultaneously without cross-reactions with other main shrimp pathogens such as white spot syndrome virus(WSSV),Vibrio parahaemolyticus(AHPND),infectious hypodermal and haematopoietic necrosis virus(IHHNV),covert mortality nodavirus(CMNV),infectious myonecrosis virus(IMNV),taura syndrome virus(TSV),yellow head virus 1(YHV-1).The method had a detection limit of 1.67 × 101 copies/μL from the sensitivity test results of 10 times diluted plasmids mixture of DIV1,EHP and IPV,slightly lower than that of the reference single real-time PCR for each pathogen with a detection limit of 1.67 × 100 copies/μL.Three concentrations of pDIV1,pEHP and pIPV(5 × 105 copies/μL,5 × 104 copies/μL,5×103 copies/μL)were selected to evaluate the repeatability of the method,and the results showed the coefficient of variation in both intra-and inter-group repeatability tests was less than 1%,indicating that the method had good repeatability.The detection results from 105 samples of fry and brood shrimp by the triplex method showed the positive rate of DIV1,EHP and IPV was 21.9%(23/105),14.3%(15/105)and 45.7%(48/105)respectively,and the mixed infection rate of the three pathogens was 1.9%(2/105),which was consistent with the detection results by DIV1,EHP and IPV single fluorescence quantification method.The coincidence rate of positive samples was 100%.The method established in this study could provide a rapid,sensitive and specific technique for simultaneous detection of DIV 1,EHP and IPV in clinical samples from daily monitoring and epidemiological investigation.

shrimpDIV1EHPIPVmultiplex real-time PCR

徐晔、周毅、王娜、窦维伟、王静、王凤芝、段宏安

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连云港海关综合技术中心,江苏连云港 222000

中国检验检疫科学研究院,北京 100176

虾十足目虹彩病毒1 虾肝肠胞虫 虾传染性早熟病毒 多重TaqMan荧光定量PCR

南京海关科研项目

2023KJ22

2024

中国预防兽医学报
中国农业科学院哈尔滨兽医研究所

中国预防兽医学报

CSTPCD北大核心
影响因子:0.674
ISSN:1008-0589
年,卷(期):2024.46(8)