首页|积雪草CabHLH基因家族的全基因组鉴定和表达分析

积雪草CabHLH基因家族的全基因组鉴定和表达分析

Whole Genome Identification and Gene Expression Analysis of CabHLH Gene Family in Centella asiatica

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目的:鉴定积雪草中bHLH转录因子家族,利用生信分析其蛋白理化性质和在基因组中的相关特性,为CabHLH家族基因在积雪草三萜生物合成调控研究中提供理论基础.方法:根据bHLH基因家族特征筛选积雪草的CabHLH基因家族,进行生信学分析和表达分析.结果:基于基因组和转录组一共鉴定得到137个CabHLHs基因,命名为CabHLH001~CabHLH137.每个CabHLH蛋白均有bHLH结构域,多数为亲水性蛋白,定位于细胞核,系统进化树分析发现CabHLH家族蛋白成员可被分为16个组别29个亚组,与拟南芥AtbHLH蛋白系统分类结果类似.积雪草CabHLHs在基因组内存在大量的基因复制,而与拟南芥的共线性发现成对基因较少,这些成对的基因具有类似的生物学功能.137个CabHLHs在不同组织部位呈现差异表达,CabHLH017、CabHLH023、CabHLH096、CabHLH076表达受到茉莉酸甲酯(MeJA)诱导并在叶中高表达.结论:在积雪草基因组中共获得137个CabHLHs基因,具有亚家族分类的序列特征和不同的表达模式,叶中高表达并响应MeJA的CabHLHs可能具有调控积雪草三萜生物合成的作用.
Objective:To identify the bHLH transcription factor family in Centella asiatica and utilize bioinformatics to analyze the physicochemical properties of their proteins and related properties in the genome,providing a theoretical basis for the study of CabHLH gene family in the regulation of triter-pene biosynthesis in C.asiatica.Methods:Screening the CabHLH gene family of C.asiatica based on the characteristics of the bHLH gene family,and conducting bioinformatics and expression analysis.Results:A total of 137 CabHLH genes,named CabHLH001 to CabHLH137,were identified via ge-nome and transcriptome.All CabHLH proteins contained bHLH domain.Most of them were hydrophilic proteins and distributed in the nucleus.Phylogenetic tree analysis showed that CabHLH proteins could be divided into 16 groups and 29 subgroups,similar to the systematic classification of bHLH proteins in Arabidopsis thaliana.There was a large amount of gene duplication of CabHLHs in the C.asiatica genome.The collinear analysis of the genome of C.asiatica and A.thaliana showed less gene pairs,which may have similar biological functions.The 137 CabHLH genes were differently expressed in leaf,stem and root.The expression of CabHLH017,CabHLH023,CabHLH096 and CabHLH076 was induced by methyl jasmonate and highly expressed in leaves.Conclusion:A total of 137 CabHLH genes obtained from C.asiatica genome contained the sequence characteristics of subfamily classifica-tion and different gene expression.The CabHLHs,which were highly expressed and responsive to methyl jasmonate in leaves,may play a role in regulating triterpene biosynthesis in the plant.

Centella asiaticabHLH gene familyGenome-wide identificationSystem evolution

宋贞贞、吴军、童黄锦

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南京中医药大学附属中西医结合医院,江苏 南京 210028

江苏省中医药研究院,江苏 南京 210028

积雪草 bHLH基因家族 全基因组鉴定 进化分析

2024

中国野生植物资源
中华全国供销合作总社南京野生植物综合利用研究院

中国野生植物资源

影响因子:0.667
ISSN:1006-9690
年,卷(期):2024.43(10)