中华实验和临床病毒学杂志2024,Vol.38Issue(6) :649-654.DOI:10.3760/cma.j.cn112866-20240904-00133

四川省首例入境寨卡病毒病的病原分子生物学特征分析

Molecular biological characterization analysis of the first imported case of Zika virus disease in Sichuan province of China

李伟 田绿波 钟红荣 蒋明凤 陈振华 张青 周兴余 潘明 冯玉亮
中华实验和临床病毒学杂志2024,Vol.38Issue(6) :649-654.DOI:10.3760/cma.j.cn112866-20240904-00133

四川省首例入境寨卡病毒病的病原分子生物学特征分析

Molecular biological characterization analysis of the first imported case of Zika virus disease in Sichuan province of China

李伟 1田绿波 2钟红荣 1蒋明凤 1陈振华 3张青 2周兴余 1潘明 1冯玉亮1
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作者信息

  • 1. 四川省疾病预防控制中心,成都 610041
  • 2. 四川国际旅行卫生保健中心(成都海关口岸门诊部),成都 610041
  • 3. 成都市疾病预防控制中心,成都 610041
  • 折叠

摘要

目的 对1例2024年6月28日自新加坡入境成都天府国际机场口岸中转的发热旅客进行寨卡病毒(Zika virus,ZIKV)实验室检测,研究四川首例ZIKV阳性入境中转旅客中ZIKV的遗传进化和生物学特征,为寨卡病毒病(Zika virus disease)防控提供参考依据.方法 采集患者血液样本,采用实时荧光定量逆转录聚合酶链式反应(RT-qPCR)进行ZIKV核酸检测;同时对病例样本进行扩增子靶向全基因组测序,利用CLC Genomics Workbench软件对测序数据进行组装和分析,最后用Mega7.0软件进行系统进化树构建和同源性分析.结果 该病例血液样本ZIKV核酸检测结果显示阳性.基于ZIKV全基因组序列构建的系统发育树显示该ZIKV属于亚洲型,与泰国株在同一个进化分支,其亲缘关系较近,基因同源性分析表明该ZIKV与亚洲型及非洲型毒株的全基因组核苷酸相似性在84.4%~98.6%之间.氨基酸变异分析显示该ZIKV具有139S、982V、2634M的基因分子特征.结论 2024年6月四川入境中转旅客体内的ZIKV属于亚洲型,其流行病学调查结果与实验室诊断结果一致.

Abstract

Objective To detect and study the genetic evolution and biological characteristics of the first imported Zika virus(ZIKV)in a suspected case from Singapore to Sichuan Tianfu airport for inbound transfer on June 28,2024,and so to provide reference for prevention and control of ZIKV disease.Methods Serum sample was collected from the inbound transfer passenger,we detected ZIKV RNA using real-time RT-PCR method.The whole genome sequence was obtained through target next-generation sequencing(tNGS).CLC Genomics Workbench software was used for sequence analysis and splicing,and MEGA 7.0 software was used for phylogenetic tree construction.Results Real-time RT-PCR result showed that the serum sample was positive.The phylogenetic tree which was constructed based on the whole genome sequence of ZIKV indicated the Sichuan strain was located on Asian lineage.Gene homology analysis showed that the homology between Sichuan strain and Asian,African strains ranged from 84.4%-98.6%.The Sichuan strain showed unique molecular features of 139S,982V and 2634M.Conclusions The ZIKV strain in Sichuan inbound transfer passenger in June 2024 belongs to the Asian lineage,which agrees with the epidemiological investigation outcome.

关键词

寨卡病毒/全基因组测序/系统进化分析

Key words

Zika virus/Target next-generation sequencing/Phylogenetic analysis

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出版年

2024
中华实验和临床病毒学杂志
中华医学会

中华实验和临床病毒学杂志

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影响因子:0.718
ISSN:1003-9279
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