植物保护学报2024,Vol.51Issue(4) :774-781.DOI:10.13802/j.cnki.zwbhxb.2024.2023069

链梗葡萄孢菌基因组中致病效应因子的预测及功能验证

Genome-wide prediction and functional identification of pathogenic effectors of fungus Streptobotrys caulophylli

邬娜娜 张帆 吴明德 杨龙 李国庆 张静
植物保护学报2024,Vol.51Issue(4) :774-781.DOI:10.13802/j.cnki.zwbhxb.2024.2023069

链梗葡萄孢菌基因组中致病效应因子的预测及功能验证

Genome-wide prediction and functional identification of pathogenic effectors of fungus Streptobotrys caulophylli

邬娜娜 1张帆 1吴明德 1杨龙 1李国庆 1张静1
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作者信息

  • 1. 华中农业大学植物科学技术学院,湖北省作物病害监测和安全控制重点实验室,武汉 430070
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摘要

为深入发掘链梗葡萄孢菌Streptobotrys cawlophylli的致病效应因子,对链梗葡萄孢菌菌株StreptoBC-1进行全基因组测序,利用生物学信息学方法对获得的蛋自序列进行分泌蛋白预测,对获得的分泌蛋白进行碳水化合物酶类、毒力相关蛋白类型和致病效应因子进行预测,随机选择10个候选致病效应因子采用实时荧光定量PCR技术对其功能进行验证.结果显示:共获得9 833条蛋自序列,从中共筛选获得483个经典分泌蛋白,所占比例为4.9%;在483个经典分泌蛋白中,169个属于碳水化合物酶类,被注释到与灰霉病菌Botrytis cinerea毒力相关的蛋白有274个,共获得26个候选致病效应因子.黄瓜叶片接种链梗葡萄孢菌菌株StreptoBC-1 24 h时,在随机选择的10个致病效应因子中有9个致病效应因子编码基因的相对表达量均较对照显著上调,相对表达量为对照的1.9倍~3 196.8倍,1个致病效应因子较对照显著下调.表明筛选获得的效应因子与链梗葡萄孢菌侵染过程密切相关,且大部分候选致病效应因子正调控链梗葡萄孢菌的侵染.

Abstract

In order to explore the pathogenic effectors of fungus Streptobotrys caulophylli,secreted pro-teins predicted based on the amino acid sequences obtained from the strain StreptoBC-1 genomes were analyzed using bioinformatics method.Types of carbohydrate enzymes,virulence related proteins and pathogenic effectors of secreted proteins were also predicted.Ten candidate pathogenicity effector genes of the strain StreptoBC-1 were verified by real-time fluorescence quantitative PCR.The results showed that a total of 9 833 amino acid sequences were obtained,and a total of 483 classical secreted proteins were detected(accounted for 4.9%)including 169 carbohydrate active enzymes(CAZymes),274 annotated virulence-related proteins of Botrytis cinerea,and 26 candidate pathogenicity effectors.It was found that the relative expression levels of nine out of ten randomly selected pathogenicity effec-tors were significantly up-regulated and one down-regulated at 24 h post-inoculation of cucumber leaves;the gene expression ratios were 1.9 to 3 196.8-fold change,and only one was significantly down-regulated compared with the control group.Our results revealed that effectors screened were closely re-lated to the infection process of S.caulophylli,and most of the verified candidate pathogenicity effec-tors that could positively regulate the S.caulophylli infection.

关键词

链梗葡萄孢菌/基因组/碳水化合物酶类/致病效应因子/基因表达

Key words

Streptobotrys caulophylli/genome/CAZyme/pathogenicity effector/gene expression

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基金项目

国家自然科学基金(31772212)

出版年

2024
植物保护学报
中国植物保护学会 中国农业大学

植物保护学报

CSTPCD北大核心
影响因子:1.207
ISSN:0577-7518
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