首页|基于黄瓜基因组重测序的InDel标记开发及其应用

基于黄瓜基因组重测序的InDel标记开发及其应用

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基于黄瓜基因组重测序结果,搜索InDel位点,按照每隔1~3M个碱基对的距离选择并设计遍布全基因组的代表性InDel引物134对,以16份黄瓜典型种质检测其有效性.结果显示,134对引物均获得扩增产物,其中具有多态性的引物116对,占引物总数的86.6%.116对引物充分揭示出16份种质的多样性和特异性.本研究所开发的InDel分子标记将为黄瓜种质资源和分子遗传育种研究提供有力的遗传工具.
Development and Application of Cucumber InDel Markers Based on Genome Re-sequencing
In this study, 134 pairs of primers were designed by screening the InDel loci at a distance of every 1-3M base pairs on all chromosomes of cucumber based on genome re-sequencing. The effectiveness of the InDel markers were tested on 16 typical cucumber germplasms. The results showed that distinct PCR amplification products were obtained from the InDel markers. Among these markers, 116 InDel were polymorphic, accounting for 86. 6% of the total and revealing the genetic diversity and specificity of the tested cucumber germplasms. The InDel markers developed in the study would offer powerful tools for cucumber germplasm identification and marker-assisted selectionin cucumber breeding.

Cucumberre-sequencingInDel markergermplasm identification

李斯更、沈镝、刘博、邱杨、张晓辉、张忠华、王海平、李锡香

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中国农业科学院蔬菜花卉研究所/农业部蔬菜作物基因资源与种质创制北京科学观测实验站,北京100081

黄瓜 重测序 InDel标记 种质鉴定

国家自然科学基金农业部资源保护项目引进国际先进农业科学技术计划(948计划)农业部园艺作物生物学与种质创制重点实验室项目

31171961NB2012-2130135-282011-G1-02

2013

植物遗传资源学报
中国农业科学院作物科学研究所 中国农学会

植物遗传资源学报

CSTPCDCSCD北大核心
影响因子:1.415
ISSN:1672-1810
年,卷(期):2013.14(2)
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