基于高密度遗传图谱的水稻萌发耐淹性QTL定位
QTL Analysis for Germinability under Submergence Condition Based on a High-Density Genetic Map in Rice
孙志广 1卢百关 1刘金波 1刘艳 1李景芳 1迟铭 1陈庭木 1李健 1杨波 1刘晓敏 1王宝祥 1徐大勇1
作者信息
- 1. 连云港市农业科学院/江苏省现代作物生产协同创新中心,连云港 222000
- 折叠
摘要
通过对水稻萌发耐淹性进行QTL定位和稳定位点的聚合效应分析,可以为萌发耐淹性基因的精细定位及后续分子辅助育种奠定基础.本研究利用一个包含144份家系的强萌发耐淹性粳型杂草稻WR-4与籼稻品种广百香占的F2∶3定位群体,基于1K mGPS SNP芯片构建了一个包含825个Bin标记的高密度遗传图谱,利用完备区间作图法共检测到10个萌发耐淹性QTL,分布于水稻第3、4、7、8、9和10染色体上,LOD值介于3.6～21.3之间,可解释3.0％～21.1％的表型变异.其中,具有较高LOD值和贡献率的2个主效QTL(qGS4-1和qGS7-1)能够被重复检测到,是后续基因克隆的候选位点.根据Bin标记分型结果将不同子代在两个稳定QTL区间内分为WR型和广百香占型,在F2∶3群体中进行聚合效应分析,发现聚合增效等位基因数量越多的家系,其淹水条件下的胚芽鞘越长,这些携带多个耐性QTL的株系可为分子育种培育耐低氧萌发水稻新品种提供亲本资源.
Abstract
QTL mapping of germinability under submergence condition and pyramided effect analysis of stable sites were carried out,thus laying a foundation for fine mapping of QTL for germinability under submergence condition and marker-assisted breeding.Using an F2∶3 population with 144 individuals derived from a cross between WR-4(a weedy rice with strong germinability under submergence condition)and Guangbaixiangzhan(a susceptible indica variety,GBXZ),a high density genetic map containing 825 bin markers was produced based on 1K mGPS SNP chip.Ten QTL conferring tolerance to hypoxia were identified by complete interval mapping(ICIM).These QTL were found on chromosomes 3,4,7,8,9,and 10,with LOD values ranging from 3.6 to 21.3,explaining phenotypic variation of 3.0％-21.1％.Two major QTL(qGS4-1 and qGS7-1)with high LOD value and high phenotypic variance were repeatedly detected,and both loci could be the candidate for future gene cloning studies.According to the genotyping of bin markers in each QTL interval,different progenies were classified into WR type and GBXZ type.By further data processing and analysis of QTL stacking,it was found that individuals with more pyramided synergistic alleles showed longer coleoptile under submergence condition.Thus,these lines hosting multiple synergistic alleles might provide innovative resources for breeding rice cultivars with high germinability under submergence condition.
关键词
杂草稻/萌发耐淹性/高密度遗传图谱/QTLKey words
weedy rice/germinability under submergence condition/high density genetic map/QTL引用本文复制引用
基金项目
现代农业产业技术体系建设项目(CARS-01-61)
江苏省农业重大品种创制项目(PZCZ201704)
江苏省自然科学基金(BK20201214)
江苏省种业振兴项目(JBGS[2021]039)
连云港市财政专项(QNJJ2203)
连云港市财政专项(QNJJ2306)
连云港市"521工程"项目(第六期)(LYG06521202205)
出版年
2024
国家科技期刊平台
NSTL
维普
万方数据