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小麦bHLH家族转录因子的鉴定及其在盐胁迫条件下的表达分析

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碱性螺旋—环—螺旋(basichelix-loop-helix,bHLH)转录因子作为植物中第二大类转录因子家族,在植物生长发育、信号传导、生物合成以及响应非生物胁迫等方面发挥重要功能.为了探讨小麦bHLH转录因子在盐胁迫应答中的功能,以冬性小麦科农199为试验材料,通过转录组测序和生物信息学分析的方法对小麦bHLH转录因子在盐胁迫下的表达特性进行系统分析.结果表明,小麦中共有489个bHLH转录因子,分布在21条染色体上;构建系统进化树将bHLH家族进一步划分为9个亚族,其中Ⅵ亚族成员最多,Ⅳ亚族成员最少;盐胁迫下小麦根转录组测序结果表明,在盐胁迫处理后1和6h差异表达基因(DEG)共有44个,其中上调表达的基因有17个,下调表达的有27个;GO分析表明,DEG富集在水、盐胁迫、生长素调节等方面;KEGG注释分析表明,DEGs主要富集在淀粉和蔗糖代谢途径以及氨基糖和核苷酸糖代谢等信号通路;对部分DEG进行qRT-PCR验证,结果表明DEG的表达模式与转录组测序结果一致,证明了 RNA-Seq结果的准确性.
Identification of bHLH Family Transcription Factors of Wheat and Expression Analysis under Salt Stress
Abstact Basic helix-loop-helix,or bHLH,is a major family of plant transcription factors that is involved in signal transduction,biosynthesis,abiotic stress response,and plant growth and development.Using the winter wheat cultivar'Kenong 199'as the experimental material,we systematically analyzed the expression characteristics of wheat bHLH transcription factor under salt stress using transcriptional sequencing and bioinformatics analysis to investigate the functions of common wheat bHLH transcription factors in response to salt stress.According to the findings,wheat contains 489 bHLH transcription factors spreading across 21 chromosomes.Following the construction of the phylogenetic tree,the bHLH family was further subdivided into nine subfamilies,with the Ⅵ subfamily having the greatest number of members and the Ⅳ subfamily having the least.Wheat roots'transcriptome sequencing revealed 44 differentially expressed genes(DEGs),of which 17 were up-regulated and 27 were down-regulated at one and six hours after salt stress.According to GO analysis,DEGs were more abundant in the regulation of auxin,water and salt stress.According to KEGG annotation analysis,DEGs were primarily enriched in metabolic pathways related to starch and sucrose,amino sugars,nucleotide sugars,and other signaling pathways.The accuracy of the RNA-Seq results was confirmed through qRT-PCR verification of a few DEGs,which revealed that their expression pattern matched the transcriptome sequencing results.

WheatbHLH transcription factorSalt stressBioinformatics analysis

吕宝莲、杨宇昕、崔立操、史峰、马亮、孔秀英、张立超、倪志勇

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新疆农业大学生命科学学院,830052,新疆乌鲁木齐

中国农业科学院作物科学研究所,100081,北京

石家庄市农林科学研究院,050041,河北石家庄

小麦 bHLH转录因子 盐胁迫 生物信息学分析

新疆维吾尔自治区重大科技专项项目

2021A02001-3

2024

作物杂志
中国作物学会 中国农科院作物科学研究所

作物杂志

CSTPCD北大核心
影响因子:0.821
ISSN:1001-7283
年,卷(期):2024.(1)
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